Get current MSigDB gene sets

Retrieves the current MSigDB gene set collection from the `msigdbr` package. Use this when you want the newest release; the bundled [MSigDB] cache is used by default and needs neither `msigdbr` nor network access.

Usage

get_msigdbr(collection = NULL)

Arguments

collection

character; MSigDB collection to retrieve. Use `NULL` (default) for all collections, or a specific one such as `"C2"`, `"C5"`, or `"H"`.

Value

a named list of gene sets, each element a character vector of Entrez gene IDs

See also

[MSigDB] for the bundled offline snapshot

Examples

if (FALSE) { # \dontrun{
MSigDBr <- get_msigdbr()
fs <- getFunctionalSpectra(eps, geneSets = MSigDBr)
} # }